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65 Open 153 Closed
65 Open 153 Closed
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Issues list

[cudamapper] Do not do self-mapping of reads cudamapper GPU-based overlapper
#531 opened Aug 5, 2020 by mimaric
1
[cudapoa] consolidate macros for banded alignment in single header cudapoa GPU-based partial order alignment enhancement New feature or request good first issue Good for newcomers
#528 opened Aug 4, 2020 by tijyojwad
[cudamapper] Use stream callback functions to update Index state cudamapper GPU-based overlapper
#525 opened Aug 3, 2020 by mimaric
@mimaric
[cudamaper] Use events to sync generation and communication streams cudamapper GPU-based overlapper
#524 opened Aug 3, 2020 by mimaric
@mimaric
[cudaaligner] Tests should load data from file cudaaligner GPU-based aligner good first issue Good for newcomers
#505 opened Jul 15, 2020 by ahehn-nv
[cudapoa][cudaaligner] adding support for different types of gap penalty cudaaligner GPU-based aligner cudapoa GPU-based partial order alignment enhancement New feature or request
#496 opened Jul 13, 2020 by r-mafi
1
[cudamapper] Split index pairs which cause OOM into multiple pairs of indices cudamapper GPU-based overlapper
#491 opened Jul 8, 2020 by mimaric
[cudamapper] Process skipped pairs of indices separately cudamapper GPU-based overlapper
#490 opened Jul 8, 2020 by mimaric
[pygw] reference to stream getting lost in CudaAlignerBatch object pyclaragenomics
#476 opened Jun 28, 2020 by tijyojwad
[tests] upgrade CI harness scripts to be more robust CI good first issue Good for newcomers
#469 opened Jun 17, 2020 by tijyojwad
[cudapoa] toward DRY code by merging estimate_max_poas() and calculate_space_per_poa() cudapoa GPU-based partial order alignment enhancement New feature or request
#466 opened Jun 15, 2020 by r-mafi
@r-mafi
[cudamapper] Perform range-check on program arguments. cudamapper GPU-based overlapper enhancement New feature or request good first issue Good for newcomers
#451 opened Jun 5, 2020 by ahehn-nv
[pycga] Pass arguments to setup.py from setup_pyclaragenomics.py directly enhancement New feature or request pyclaragenomics
#443 opened May 21, 2020 by ohadmo
@ohadmo
[CI] Support different image combinations for pull request branch and master/dev branch CI
#433 opened May 18, 2020 by ohadmo
@ohadmo
[common] Use int32_t for position_in_read_t and number_of_basepairs_t. cudamapper GPU-based overlapper style Code style related issues
#429 opened May 13, 2020 by ahehn-nv v0.6.0
@ahehn-nv
[cudamapper] Move overlaps post-processing to GPU cudamapper GPU-based overlapper
#428 opened May 12, 2020 by mimaric v0.6.0
@vellamike @edawson
1
[cudapoa] Re mixed usage of local and global index in banded NW cudapoa GPU-based partial order alignment enhancement New feature or request
#425 opened May 11, 2020 by r-mafi
[pycga] enable doc generation test for pyclaragenomics documentation Improvements or additions to documentation pyclaragenomics
#419 opened May 7, 2020 by tijyojwad
1
[pyclaragenomics] increase cudapoa test coverage cudapoa GPU-based partial order alignment pyclaragenomics
#392 opened Apr 22, 2020 by tijyojwad
@rilango
[cudapoa] Reconcile cudapoa BatchSize API between C++ and Python cudapoa GPU-based partial order alignment enhancement New feature or request
#391 opened Apr 22, 2020 by tijyojwad
[cudamapper] generate shared library for cudamapper cudamapper GPU-based overlapper
#382 opened Apr 22, 2020 by tijyojwad
[pyclaragenomics] Add python API for cudamapper components pyclaragenomics
#381 opened Apr 22, 2020 by tijyojwad
[cudaaligner] use device_copy_n cudaaligner GPU-based aligner enhancement New feature or request
#355 opened Apr 9, 2020 by ahehn-nv
@ahehn-nv
[cudaaligner] add cudaaligner binary for pairwise global alignment cudaaligner GPU-based aligner enhancement New feature or request
#345 opened Mar 31, 2020 by tijyojwad
[cudamapper] add end2end binary run test
#323 opened Mar 11, 2020 by tijyojwad v0.6.0
@ohadmo
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