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Issues: NVIDIA-Genomics-Research/GenomeWorks
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[cudaaligner] Disabled caching device-allocator may trigger OOM in cudaaligner
bug
Something isn't working
cudaaligner
GPU-based aligner
#630
opened Feb 16, 2021 by
ahehn-nv
[logging] reduce logging overhead
enhancement
New feature or request
sdk
Overall SDK related improvements
#616
opened Dec 10, 2020 by
tijyojwad
[cudapoa] make maximum number of edges per node configurable
cudapoa
GPU-based partial order alignment
enhancement
New feature or request
#607
opened Nov 30, 2020 by
r-mafi
terminate called after throwing an instance of 'std::runtime_error'
#603
opened Nov 26, 2020 by
bellstwohearted
How to install GenomeWorks on local machine?
documentation
Improvements or additions to documentation
#593
opened Oct 28, 2020 by
kountaydwivedi
[cudaextender] Performance analysis
cudaextender
GPU-based seed extension algorithms
#580
opened Oct 1, 2020 by
atadkase
[cudaextender] Kernel optimizations
cudaextender
GPU-based seed extension algorithms
#579
opened Oct 1, 2020 by
atadkase
[cudaextender] Make output compression async
cudaextender
GPU-based seed extension algorithms
#578
opened Oct 1, 2020 by
atadkase
[cudaextender] Explore configurability of kernel launch parameters.
cudaextender
GPU-based seed extension algorithms
#577
opened Oct 1, 2020 by
atadkase
[cudaextender] Calculate memory limits based on datastructures used.
cudaextender
GPU-based seed extension algorithms
#576
opened Oct 1, 2020 by
atadkase
[cudaextender] Check if entropy calculation can be done using a float.
cudaextender
GPU-based seed extension algorithms
#575
opened Oct 1, 2020 by
atadkase
[cudaextender] Replace cudaextender's hardcoded encoding scheme with cudasequence
cudaextender
GPU-based seed extension algorithms
#574
opened Oct 1, 2020 by
atadkase
[pygenomeworks] evaluate_paf script is too slow to be practical for very large PAF files
#571
opened Sep 23, 2020 by
edawson
[pygenomeworks] Support reading compressed PAF as input
enhancement
New feature or request
#559
opened Sep 15, 2020 by
edawson
[cudamapper] Do not do self-mapping of reads
cudamapper
GPU-based overlapper
#531
opened Aug 5, 2020 by
mimaric
[cudapoa] consolidate macros for banded alignment in single header
cudapoa
GPU-based partial order alignment
enhancement
New feature or request
good first issue
Good for newcomers
#528
opened Aug 4, 2020 by
tijyojwad
[cudaaligner] Tests should load data from file
cudaaligner
GPU-based aligner
good first issue
Good for newcomers
#505
opened Jul 15, 2020 by
ahehn-nv
[cudapoa][cudaaligner] adding support for different types of gap penalty
cudaaligner
GPU-based aligner
cudapoa
GPU-based partial order alignment
enhancement
New feature or request
#496
opened Jul 13, 2020 by
r-mafi
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