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Issues list

create conda builds for C++ libraries and python modules enhancement New feature or request sdk Overall SDK related improvements
#95 opened Aug 29, 2019 by tijyojwad
@ohadmo
Evaluate nvBowTie import into CGA enhancement New feature or request sdk Overall SDK related improvements
#111 opened Sep 3, 2019 by tijyojwad
Increase cudaaligner singlealignment sweep to 1 Mb cudaaligner GPU-based aligner enhancement New feature or request
#112 opened Sep 3, 2019 by tijyojwad
@ahehn-nv
genome_simulator slow on large genomes enhancement New feature or request pyclaragenomics
#128 opened Sep 6, 2019 by vellamike
@vellamike
Create Error class for python bindings cudaaligner GPU-based aligner cudapoa GPU-based partial order alignment enhancement New feature or request pyclaragenomics
#139 opened Sep 13, 2019 by tijyojwad
@rilango
Move enums back to enum classes in C++ CGA cudaaligner GPU-based aligner cudapoa GPU-based partial order alignment pyclaragenomics regression sdk Overall SDK related improvements
#140 opened Sep 13, 2019 by tijyojwad
[cudaaligner] Add character set check to API cudaaligner GPU-based aligner enhancement New feature or request good first issue Good for newcomers
#142 opened Sep 16, 2019 by tijyojwad
improve alignment error handling in kernel cudaaligner GPU-based aligner enhancement New feature or request
#159 opened Sep 27, 2019 by tijyojwad
[cudamapper] Number of overlaps generated has dependency on index_size bug Something isn't working
#172 opened Oct 4, 2019 by vellamike
@vellamike
[common] fasta file I/O performance enhancement New feature or request
#195 opened Oct 22, 2019 by ahehn-nv
@ahehn-nv
[cudapoa] Add alignment checks to cudapoa host allocation bug Something isn't working cudapoa GPU-based partial order alignment
#215 opened Nov 14, 2019 by tijyojwad
[cga] Implement host pool allocator enhancement New feature or request sdk Overall SDK related improvements
#319 opened Mar 5, 2020 by mimaric
@mimaric
[cudamapper] add end2end binary run test
#323 opened Mar 11, 2020 by tijyojwad v0.6.0
@ohadmo
[cudaaligner] add cudaaligner binary for pairwise global alignment cudaaligner GPU-based aligner enhancement New feature or request
#345 opened Mar 31, 2020 by tijyojwad
[cudaaligner] use device_copy_n cudaaligner GPU-based aligner enhancement New feature or request
#355 opened Apr 9, 2020 by ahehn-nv
@ahehn-nv
[pyclaragenomics] Add python API for cudamapper components pyclaragenomics
#381 opened Apr 22, 2020 by tijyojwad
[cudamapper] generate shared library for cudamapper cudamapper GPU-based overlapper
#382 opened Apr 22, 2020 by tijyojwad
[cudapoa] Reconcile cudapoa BatchSize API between C++ and Python cudapoa GPU-based partial order alignment enhancement New feature or request
#391 opened Apr 22, 2020 by tijyojwad
[pyclaragenomics] increase cudapoa test coverage cudapoa GPU-based partial order alignment pyclaragenomics
#392 opened Apr 22, 2020 by tijyojwad
@rilango
[cudapoa] Re mixed usage of local and global index in banded NW cudapoa GPU-based partial order alignment enhancement New feature or request
#425 opened May 11, 2020 by r-mafi
[common] Use int32_t for position_in_read_t and number_of_basepairs_t. cudamapper GPU-based overlapper style Code style related issues
#429 opened May 13, 2020 by ahehn-nv v0.6.0
@ahehn-nv
[CI] Support different image combinations for pull request branch and master/dev branch CI
#433 opened May 18, 2020 by ohadmo
@ohadmo
[pycga] Pass arguments to setup.py from setup_pyclaragenomics.py directly enhancement New feature or request pyclaragenomics
#443 opened May 21, 2020 by ohadmo
@ohadmo
[cudamapper] Perform range-check on program arguments. cudamapper GPU-based overlapper enhancement New feature or request good first issue Good for newcomers
#451 opened Jun 5, 2020 by ahehn-nv
[cudapoa] toward DRY code by merging estimate_max_poas() and calculate_space_per_poa() cudapoa GPU-based partial order alignment enhancement New feature or request
#466 opened Jun 15, 2020 by r-mafi
@r-mafi
ProTip! Exclude everything labeled bug with -label:bug.