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[cudaextender] Calculate memory limits based on datastructures used. #576

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atadkase opened this issue Oct 1, 2020 · 0 comments
Open

[cudaextender] Calculate memory limits based on datastructures used. #576

atadkase opened this issue Oct 1, 2020 · 0 comments
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cudaextender GPU-based seed extension algorithms

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@atadkase
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atadkase commented Oct 1, 2020

Currently element and memory limits are artifacts of hardcoded global memory limits in SegAlign. To be replaced with actual calculation of memory requirements with sizes of datastructures taken into consideration. Also currently the max limit is based on total global memory, which should be replaced with memory available from the passed in allocator.
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cudaextender GPU-based seed extension algorithms
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