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@FrancisCrickInstitute

The Francis Crick Institute

Popular repositories

  1. Etch-a-Cell-Nuclear-Envelope Etch-a-Cell-Nuclear-Envelope Public

    Python 8 1

  2. OmeSliCC OmeSliCC Public

    Ome(ro) SLide Image Conversion and Compression pipline (OmeSliCC)

    Python 7 1

  3. warpAnnotations warpAnnotations Public

    A tool to transform annotations (such as points, skeletons or meshes) between spatial datasets.

    MATLAB 5

  4. TRACERx-PHLEX TRACERx-PHLEX Public

    Modular pipeline for integrated analysis of the tumour microenvironment using multiplex imaging

    Shell 5

  5. cbias-napari cbias-napari Public

    Introduction to Napari training course

    Jupyter Notebook 5 1

  6. ActiveUnetSegmentation ActiveUnetSegmentation Public

    Unet implementation to work with active contours for segmentations. Using keras and tensorflow 1.15 or 2.5.

    Python 4

Repositories

Showing 10 of 115 repositories
  • CALM Public

    Crick Advanced Light Microscopy

    Jupyter Notebook 0 GPL-3.0 1 4 0 Updated Jun 4, 2024
  • segment-anything Public Forked from facebookresearch/segment-anything

    The repository provides code for running inference with the SegmentAnything Model (SAM), links for downloading the trained model checkpoints, and example notebooks that show how to use the model.

    Jupyter Notebook 0 Apache-2.0 5,357 0 0 Updated Jun 3, 2024
  • uniprot_annotation Public

    A script to collect residue annotations for a list of proteins using the UniProt ID mapping tool

    Python 0 0 0 0 Updated May 30, 2024
  • PARSEG Public

    A novel approach to tackle overlapping segmentation in bioimages. Vanessa Dao, ELMI 2024

    Jupyter Notebook 0 GPL-3.0 0 6 0 Updated May 29, 2024
  • OmeSliCC Public

    Ome(ro) SLide Image Conversion and Compression pipline (OmeSliCC)

    Python 7 1 0 0 Updated May 28, 2024
  • TRACERx-PHLEX Public

    Modular pipeline for integrated analysis of the tumour microenvironment using multiplex imaging

    Shell 5 MIT 0 0 0 Updated May 24, 2024
  • AnaFind Public
    ImageJ Macro 0 0 0 0 Updated May 22, 2024
  • ImageJ Macro 0 GPL-3.0 0 0 0 Updated May 22, 2024
  • Segment-Flow Public

    Nextflow pipeline for deep learning segmentation models

    Python 2 1 0 0 Updated May 21, 2024
  • TWOMBLI Public Forked from wershofe/TWOMBLI

    A ImageJ Plugin implementation of TWOMBLI

    ImageJ Macro 0 3 11 1 Updated May 20, 2024

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