This repository contains solutions to problems listed on the Rosalind project website
-
Updated
Feb 2, 2019 - Rust
Bioinformatics is an interdisciplinary field that intersects with biology, computer science, mathematics and statistics. It concerns itself with the development and use of methods and software tools for collecting and analyzing biological data.
This repository contains solutions to problems listed on the Rosalind project website
A library to read, manipulate and write various genetic sequencing formats.
The GMols server providing functionalities to the GMols client.
Rust bindings for the Antimony language of biochemical models.
A tool for filtering fasta sequences with threshold of specific bases (e.g. 'N'), written in Rust.
This tool allows users to simulate DNA sequences with mutations, variations, and bias. Ideal for quick experiments, testing, or academic purposes, it provides a simple yet powerful solution for generating synthetic DNA data in the Rust programming language.
An asynchronous, light-weight Rust library for interacting with bioinformatics web resources.
A tight DNA sequencing quality analyser written in Rust from scratch. Provide raw DNA sequencing run .fastq files and visualise the quality plots of all of the reads in record time.
A containerised web-based sequencing pipeline engine with GUI.
Speedy FASTA/FASTQ library and toolkit
Specifications and validators for omics data formats used on C. autoethanogemum C1 program
Command line tools for working with various gene annotation formats.
Rust implementation of linear-time direct superbubble detector
PhageFilter uses a Sequence Bloom Tree (SBT) to filter bacteriophage reads from metagenomic files.
DNA FASTA encoder for compressing raw sequences into searchable binary format (extract nth subsequence using random access without index file)
Programs to read from a VCF files and output computations based on their data