Official code repository for GATK versions 4 and up
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Updated
May 28, 2024 - Java
Official code repository for GATK versions 4 and up
This Snakemake pipeline implements the GATK best-practices workflow
GATK RNA-Seq Variant Calling in Nextflow
Learning the Variant Call Format
High performance data storage for importing, querying and transforming variants.
Bioinformatics on GCP, AWS or Azure
Sentieon DNAseq
Whole Exome/Whole Genome Sequencing alignment pipeline
GitHub for the SIB courses NGS - Genome variant analysis
An automated tool for processing whole-exome sequencing data
🐍🔧 Snakemake wrappers for GATK.
Variant calling pipeline for germline enrichment NGS data
Multi-bAse Codon-Associated variant Re-annotatiON (MACARON)
Supporting GATK4 on IBM Power architecture, including enablement, performance tuning and optimization.
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