An analysis and visualization platform for 'omics data
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Updated
Jun 5, 2024 - Python
An analysis and visualization platform for 'omics data
PopPUNK 👨🎤 (POPulation Partitioning Using Nucleotide Kmers)
A flexible, scalable, and reproducible pipeline to automate variant calling from sequence reads.
Rapid population clustering with autoencoders
feature-based deep learning for the identification of selective sweeps
deep learning prediction of geographic location from individual genome sequences
Pinpoints the mutation favored by selection
LDlink is a suite of web-based applications designed to easily and efficiently interrogate linkage disequilibrium in population groups. Each included application is specialized for querying and displaying unique aspects of linkage disequilibrium.
Python package for detecting positive selective sweeps using time-series genomics sampling data.
A tool to visualize the haplotype pattern and various information in excel.
Method to estimate the age and intensity of recent bottlenecks/founder events, using genotype data and a recombination map.
Uncertainty estimation toolkit for dimensionality reduction on population genetics data.
Barton and Zeng (2019) - Pipeline for great tit indel analysis.
Combining phylogenetic networks and Random Forests for prediction of ancestry from multilocus genotype data
A general game-theoretical framework to carry out scientific simulations of populations' evolution according to the Moran model 🧮
Compute the Tajima's-D, Pi-Estimator or Watterson-Estimator for multiple sequences.
PyPI package containing opposition learning operators and population initializers for evolutionary algorithms
API for MRC-IEU OpenGWAS platform (https://gwas.mrcieu.ac.uk)
Barton and Zeng (2018) - Pipeline and scripts for popgen analysis of whole-genome drosophila data.
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