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Nextstrain build for novel coronavirus SARS-CoV-2

Folding@home COVID-19 efforts

Models of SEIRS epidemic dynamics with extensions, including network-structured populations, testing, contact tracing, and social distancing.

Real-time updates and information about key SARS-CoV-2 variants, plus the scripts that generate this information.

A global collection of Open Source projects during COVID-19

A repository for sharing information on available COVID-19 RNA-Seq datasets

The Public Health Environmental Surveillance Open Data Model (PHES-ODM, or ODM). A data model, dictionary and support tools for environmental surveillance.

SARS-Cov-2 Recombinant Finder for fasta sequences

Data preprocessing scripts and preprocessed data storage for COVID-19 Scenarios project

Scrapping tool for GISAID data regarding SARS-CoV-2

Repository to propose and discuss lineages

A pipeline that ingests SARS-CoV-2 (i.e. nCoV) data from GISAID and Genbank, transforms it, stores it on S3, and triggers Nextstrain nCoV rebuilds.

Prepares a SARS-CoV-2 submission for GISAID, NCBI or ENA. Can read GISAID or NCBI files, or plain fasta+tsv/csv/xls. Finds files in input directory and merges everything into a single output directory. Auto-detects input file formats. Can submit the results to multiple repositories from the command line.

[IoT'20] Predicting the Growth and Trend of COVID-19 Pandemic using Machine Learning and Cloud Computing

COVID-19 API

Detects anomalous resting heart rate from smartwatch data.

중국 우한 바이러스 한국 확진자 통계

Transparent and robust SARS-CoV-2 variant calling and lineage assignment with comprehensive reporting.

Collection of scripts for automated SARS-CoV-2 genome surveillance.